iRefR

From irefindex
Revision as of 23:20, 24 November 2011 by PaulBoddie (talk | contribs) (Made the page use the iRefScape layout. Added the package description.)


iRefR is an R package that provides access to iRefIndex. It allows the user to load any version of the consolidated protein interaction database "iRefIndex" and perform tasks such as: selecting databases, pmids, experimental methods, searching for specific proteins, separate binary interactions from complexes and polymers, generate complexes according to an algorithm that looks after possible binary-represented complexes, make general database statistics and create network graphs, among others.

Installation

iRefR is available from CRAN as the iRefR package and can also be downloaded from...

ftp://ftp.no.embnet.org/irefindex/iRefR/current/

Documentation and tutorial material is included. First time users should refer to iRefR_tutorial.pdf in the doc directory of the source distribution.

Applications-system-80x80.png
About this image

Publication

iRefR: an R package to manipulate the iRefIndex consolidated protein interaction database.

pubmed-logo.png
About this image