Difference between revisions of "iRefR"

From irefindex
(Made the page use the iRefScape layout. Added the package description.)
Line 1: Line 1:
iRefR is an R package that provides access to iRefIndex. Recently submitted to CRAN (see http://cran.r-project.org/web/packages/iRefR/index.html) and also available from ftp://ftp.no.embnet.org/irefindex/iRefR/current/
+
__NOTOC__
  
Documentation and tutorial material is included.  First time users should refer to iRefR_tutorial.pdf in the doc directory.
+
<div style="float:right">
 +
<facebook-like />
 +
</div>
  
iRefR was written by Antonio Mora and his been published [http://www.biomedcentral.com/1471-2105/12/455 here].
+
iRefR is an R package that provides access to [[iRefIndex]]. It allows the user to load any version of the consolidated protein interaction database "iRefIndex" and perform tasks such as: selecting databases, pmids, experimental methods, searching for specific proteins, separate binary interactions from complexes and polymers, generate complexes according to an algorithm that looks after possible binary-represented complexes, make general database statistics and create network graphs, among others.
 +
 
 +
{|class="wikitable" style="text-align:left; clear: left" border="0" cellpadding="10"
 +
| style="vertical-align: top" |
 +
== Installation ==
 +
 
 +
iRefR is available from CRAN as the [http://cran.r-project.org/web/packages/iRefR/index.html iRefR package] and can also be downloaded from...
 +
 
 +
ftp://ftp.no.embnet.org/irefindex/iRefR/current/
 +
 
 +
Documentation and tutorial material is included.  First time users should refer to <tt>iRefR_tutorial.pdf</tt> in the <tt>doc</tt> directory of the source distribution.
 +
|<imagemap>
 +
Image:Applications-system-80x80.png
 +
default [ftp://ftp.no.embnet.org/irefindex/iRefR/current/]
 +
</imagemap>
 +
|-
 +
| style="vertical-align: top" |
 +
== Publication ==
 +
 
 +
[http://www.biomedcentral.com/1471-2105/12/455 iRefR: an R package to manipulate the iRefIndex consolidated protein interaction database.]
 +
|<imagemap>
 +
Image:pubmed-logo.png|80x80px|left
 +
default [http://www.biomedcentral.com/1471-2105/12/455]
 +
</imagemap>
 +
|}

Revision as of 23:20, 24 November 2011


iRefR is an R package that provides access to iRefIndex. It allows the user to load any version of the consolidated protein interaction database "iRefIndex" and perform tasks such as: selecting databases, pmids, experimental methods, searching for specific proteins, separate binary interactions from complexes and polymers, generate complexes according to an algorithm that looks after possible binary-represented complexes, make general database statistics and create network graphs, among others.

Installation

iRefR is available from CRAN as the iRefR package and can also be downloaded from...

ftp://ftp.no.embnet.org/irefindex/iRefR/current/

Documentation and tutorial material is included. First time users should refer to iRefR_tutorial.pdf in the doc directory of the source distribution.

Applications-system-80x80.png
About this image

Publication

iRefR: an R package to manipulate the iRefIndex consolidated protein interaction database.

pubmed-logo.png
About this image