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Difference between revisions of "iRefR"

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iRefR is an R package that provides access to iRefIndex. Recently submitted to CRAN (see http://cran.r-project.org/web/packages/iRefR/index.html) and also available from ftp://ftp.no.embnet.org/irefindex/iRefR/current/
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Documentation and tutorial material is included.  First time users should refer to iRefR_tutorial.pdf in the doc directory.
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iRefR was written by Antonio Mora and his been published [http://www.biomedcentral.com/1471-2105/12/455 here].
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iRefR is an R package that provides access to [[iRefIndex]]. It allows the user to load any version of the consolidated protein interaction database "iRefIndex" and perform tasks such as: selecting databases, pmids, experimental methods, searching for specific proteins, separate binary interactions from complexes and polymers, generate complexes according to an algorithm that looks after possible binary-represented complexes, make general database statistics and create network graphs, among others.
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== Installation ==
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iRefR is available from CRAN as the [http://cran.r-project.org/web/packages/iRefR/index.html iRefR package] and can also be downloaded from...
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ftp://ftp.no.embnet.org/irefindex/iRefR/current/
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Documentation and tutorial material is included.  First time users should refer to <tt>iRefR_tutorial.pdf</tt> in the <tt>doc</tt> directory of the source distribution.
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default [ftp://ftp.no.embnet.org/irefindex/iRefR/current/]
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== Publication ==
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[http://www.biomedcentral.com/1471-2105/12/455 iRefR: an R package to manipulate the iRefIndex consolidated protein interaction database.]
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default [http://www.biomedcentral.com/1471-2105/12/455]
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Revision as of 16:20, 24 November 2011


iRefR is an R package that provides access to iRefIndex. It allows the user to load any version of the consolidated protein interaction database "iRefIndex" and perform tasks such as: selecting databases, pmids, experimental methods, searching for specific proteins, separate binary interactions from complexes and polymers, generate complexes according to an algorithm that looks after possible binary-represented complexes, make general database statistics and create network graphs, among others.

Installation

iRefR is available from CRAN as the iRefR package and can also be downloaded from...

ftp://ftp.no.embnet.org/irefindex/iRefR/current/

Documentation and tutorial material is included. First time users should refer to iRefR_tutorial.pdf in the doc directory of the source distribution.

Applications-system-80x80.png
About this image

Publication

iRefR: an R package to manipulate the iRefIndex consolidated protein interaction database.

pubmed-logo.png
About this image