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iRefR

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iRefR is an R package that provides access to iRefIndex. It allows the user to load any version of the consolidated protein interaction database "iRefIndex" and perform tasks such as: selecting databases, pmids, experimental methods, searching for specific proteins, separate binary interactions from complexes and polymers, generate complexes according to an algorithm that looks after possible binary-represented complexes, make general database statistics and create network graphs, among others.

Installation

iRefR is available from CRAN as the iRefR package and can also be downloaded from...

ftp://ftp.no.embnet.org/irefindex/iRefR/current/

Documentation and tutorial material is included. First time users should refer to iRefR_tutorial.pdf in the doc directory of the source distribution.

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Publication

iRefR: an R package to manipulate the iRefIndex consolidated protein interaction database.

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