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== Interactions available from major taxonomies ==
 
 
{| cellspacing="0" cellpadding="5"
 
| align="center" style="background:#f0f0f0;"|'''NCBI taxonomy identifier''' ||align="center" style="background:#f0f0f0;"|'''Scientific name''' ||align="center" style="background:#f0f0f0;"|'''Number of interactions'''
 
|-
 
| 9606 ||Homo sapiens ||581381
 
|-
 
| 559292 ||Saccharomyces cerevisiae S288C ||113303
 
|-
 
| 7227 ||Drosophila melanogaster ||69864
 
|-
 
| 10090 ||Mus musculus ||64622
 
|-
 
| 3702 ||Arabidopsis thaliana ||49690
 
|-
 
| 40674 ||Mammalia ||36350
 
|-
 
| 4932 ||Saccharomyces cerevisiae ||34555
 
|-
 
| 83333 ||Escherichia coli K-12 ||16859
 
|-
 
| 6239 ||Caenorhabditis elegans ||16728
 
|-
 
| 10116 ||Rattus norvegicus ||12907
 
|-
 
| 192222 ||Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 ||11930
 
|-
 
| 284812 ||Schizosaccharomyces pombe 972h- ||9705
 
|-
 
| 381518 ||Influenza A virus (A/Wilson-Smith/1933(H1N1)) ||4194
 
|-
 
| 632 ||Yersinia pestis ||3947
 
|}
 
  
 
== Interactions available from major taxonomies (corrected) ==
 
== Interactions available from major taxonomies (corrected) ==

Revision as of 09:33, 4 February 2018

Contents

Interactions available from major taxonomies (corrected)

NCBI taxonomy identifier Scientific name Number of interactions
9606 Homo sapiens 593178
559292 Saccharomyces cerevisiae S288C 125372
7227 Drosophila melanogaster 69867
10090 Mus musculus 61287
3702 Arabidopsis thaliana 49690
6239 Caenorhabditis elegans 16728
83333 Escherichia coli K-12 16605
192222 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 11930
10116 Rattus norvegicus 11390
284812 Schizosaccharomyces pombe 972h- 9780
381518 Influenza A virus (A/Wilson-Smith/1933(H1N1)) 4973
632 Yersinia pestis 3947
243276 Treponema pallidum subsp. pallidum str. Nichols 3642
1111708 Synechocystis sp. PCC 6803 substr. Kazusa 3270

Interactions

BHF_UCL BIND BIND_TRANSLATION BIOGRID CORUM DIP HPIDB HPRD I2D_IMEX INNATEDB INTACT INTCOMPLEX MATRIXDB MBINFO MOLCON MPACT MPIDB MPPI QUICKGO REACTOME UNIPROTPP VIRUSHOST
BHF_UCL 1254 17 22 244 13 36 1 31 3 18 1242 10 144 1 1 11 294 56 3 6
BIND 49520 45434 21065 224 24230 100 1801 22 327 22723 243 325 10 7 6304 5 270 1268 781 513 301
BIND_TRANSLATION 60145 23267 220 25556 104 2600 28 481 24883 193 407 12 11 6264 7 353 1561 960 526 348
BIOGRID 477717 205 31521 86 5923 69 1685 65750 258 3749 19 79 4239 117 4974 6588 1606 8336
CORUM 3372 249 2 189 9 91 593 137 55 3 7 20 270 191 82 33
DIP 77459 24 644 36 493 38274 309 935 7 19 6772 63 69 1757 1187 612 401
HPIDB 1526 42 13 1521 6 13 1 289 24 6 27
HPRD 40542 16 855 5897 77 1249 15 14 108 1169 2159 225 3147
I2D_IMEX 434 18 433 6 71 2 6 43 40 5 2
INNATEDB 18569 1587 28 1450 5 10 40 678 893 118 217
INTACT 289572 674 11412 330 211 3517 840 186 5808 3327 5809 24123
INTCOMPLEX 1712 36 1 2 125 6 15 134 125 72 22
MATRIXDB 14629 25 27 39 631 866 231 2968
MBINFO 331 2 1 13 15 3 5
MOLCON 212 3 23 24 2 3
MPACT 13398 116 238
MPIDB 893 51 2
MPPI 776 105 67 16 15
QUICKGO 26679 1268 629 291
REACTOME 130128 264 501
UNIPROTPP 5856 82
VIRUSHOST 45497
(Exclusive to source) 5 2703 9214 383991 2363 20744 5 28321 13903 168659 869 1042 1 5700 52 234 15965 119132 27 20077

Interactors

BHF_UCL BIND BIND_TRANSLATION BIOGRID CORUM DIP HPIDB HPRD I2D_IMEX INNATEDB INTACT INTCOMPLEX MATRIXDB MBINFO MOLCON MPACT MPIDB MPPI QUICKGO REACTOME UNIPROTPP VIRUSHOST
BHF_UCL 1460 503 550 870 501 503 246 533 75 598 1460 148 681 29 53 2 110 852 519 309 756
BIND 30246 26519 16478 2147 15790 652 2640 241 2582 19803 1970 2261 119 131 4353 56 597 5415 1930 2461 2493
BIND_TRANSLATION 36228 17301 2245 16643 699 3080 271 2905 21246 1917 2543 133 146 3997 65 667 6017 2192 2496 2746
BIOGRID 57890 2908 16304 1024 5238 273 4812 36422 2461 4053 129 185 4530 7 466 10830 3306 3436 5579
CORUM 5338 2314 688 1875 237 2147 4751 912 2012 96 158 3 442 3309 1884 1419 2419
DIP 27169 672 2060 284 2629 25255 2304 2566 118 154 4569 258 464 6232 1996 2643 2630
HPIDB 2277 806 89 880 2277 158 905 28 58 4 6 124 1239 737 465 1491
HPRD 9842 186 2918 6886 528 3251 55 118 7 263 3058 2879 1163 4235
I2D_IMEX 448 273 448 89 301 14 56 2 87 350 217 175 254
INNATEDB 8627 6841 678 3379 91 170 10 425 3891 2318 1498 3532
INTACT 86241 3363 6913 274 275 4803 930 749 15508 4929 5524 9299
INTCOMPLEX 3777 568 17 37 1221 54 142 1507 686 917 634
MATRIXDB 7068 95 163 10 384 3433 2714 1376 4367
MBINFO 274 17 2 1 39 170 74 61 81
MOLCON 275 52 197 148 121 182
MPACT 4995 519 900 3
MPIDB 930 1 169 8 19 10
MPPI 833 667 315 278 321
QUICKGO 23728 2635 2929 3805
REACTOME 5938 1078 3108
UNIPROTPP 5524 1601
VIRUSHOST 10186
(Exclusive to source) 2560 6390 17594 280 633 1868 971 28777 224 15 70 18 5842 595 706

Summary of mapping interaction records to RIGs (Table 5)

Source Total records Protein-related interactions PPI assigned to RIGID % Unique RIGIDs %
BHF_UCL 1931 1919 1919 100.00 1254 65.35
BIND 157736 91309 68064 74.54 49520 72.76
BIND_TRANSLATION 192923 84138 80606 95.80 60145 74.62
BIOGRID 1476473 664281 661220 99.54 477717 72.25
CORUM 3633 3633 3630 99.92 3372 92.89
DIP 81731 80134 79879 99.68 77459 96.97
HPIDB 2905 2783 2777 99.78 1526 54.95
HPRD 83022 83022 82983 99.95 40542 48.86
I2D_IMEX 892 891 891 100.00 434 48.71
INNATEDB 25927 25513 24971 97.88 18569 74.36
INTACT 515301 466222 466089 99.97 289572 62.13
INTCOMPLEX 1988 1746 1746 100.00 1712 98.05
MATRIXDB 26277 26256 26256 100.00 14629 55.72
MBINFO 542 522 522 100.00 331 63.41
MOLCON 377 375 375 100.00 212 56.53
MPACT 16504 16504 16373 99.21 13398 81.83
MPIDB 1505 1504 1425 94.75 893 62.67
MPPI 1814 1758 1578 89.76 776 49.18
QUICKGO 65026 53870 51762 96.09 26679 51.54
REACTOME 141996 141996 141844 99.89 130128 91.74
UNIPROTPP 10426 10341 10341 100.00 5856 56.63
VIRUSHOST 50146 50146 50127 99.96 45497 90.76
(All) 2859075 1808863 1775378 98.15 967265 54.48

Assignment of protein interactors to ROGs (Table 3)

Source Protein interactors Assigned % Arbitrary Matching sequence New or obsolete sequence Unassigned Unique proteins
BHF_UCL 5030 5030 100.00 0 0 0 0 1460
BIND 252251 215207 85.31 54 0 0 37044 30246
BIND_TRANSLATION 257681 250419 97.18 20546 0 0 7262 36228
BIOGRID 59042 58123 98.44 3199 0 0 919 57890
CORUM 15211 15208 99.98 0 0 0 3 5338
DIP 28066 27916 99.47 670 0 0 150 27169
HPIDB 7376 7370 99.92 0 0 0 6 2277
HPRD 123812 123812 100.00 13787 98296 121 0 9842
I2D_IMEX 1932 1932 100.00 0 0 0 0 448
INNATEDB 58745 58087 98.88 1 0 0 658 8627
INTACT 399851 399668 99.95 201 58 438 183 86241
INTCOMPLEX 6634 6634 100.00 0 0 0 0 3777
MATRIXDB 52533 52533 100.00 1 0 0 0 7068
MBINFO 1136 1136 100.00 0 0 0 0 274
MOLCON 862 862 100.00 0 0 0 0 275
MPACT 40349 40199 99.63 0 0 0 150 4995
MPIDB 3238 3090 95.43 0 0 0 148 930
MPPI 3568 3361 94.20 16 0 0 207 833
QUICKGO 118891 116735 98.19 0 0 0 2156 23728
REACTOME 283992 283839 99.95 640 0 0 153 5938
UNIPROTPP 25138 25138 100.00 1 0 0 0 5524
VIRUSHOST 100292 100273 99.98 4 0 0 19 10186
(All) 1845630 1796572 97.34 39120 98354 559 49058 135893

ROG summary

BHF_UCL BIND BIND_TRANSLATION BIOGRID CORUM DIP HPIDB HPRD I2D_IMEX INNATEDB INTACT INTCOMPLEX MATRIXDB MBINFO MOLCON MPACT MPIDB MPPI QUICKGO REACTOME UNIPROTPP VIRUSHOST
P 5023 194804 46262 15190 7366 1914 58084 398235 6608 52165 1136 862 3082 113957 270664 25105 98051
P+IN 386
P+N 48
PD 128348 6863 5 2994
PD+IN 1
PD+L 38
PD+LQ 10170
PD+XQ 26
PDQ 28443
PGD 641 1742 1
PGD+L 6273 3190 6
PGD+X 2
PT 2813 1 5 7 30579 2 2778 839
PTD 86728 2 2 44
PTD+LQ 4042
PTDQ 2488
PTGD 15
PTGD+L 23
PTM 3
PU 7 27 13 4 18 2 681 26 367 6 12535 32 81
PU+L 17 1 154 1 640 4
PU+O 44
PU+X 610 2 5
PUD 13 7 145
PUD+L 7 5 13
PUD+X 60 162
PUT 4 12 2527 1293
PUT+L 21 41 1
PUT+O 14
PUTD 4
PUTD+L 9 3
PV 9
S 2 45 14032 85 11
S+L 4 293 525
S+N 3
S+O 305
S+X 263
SD 5418 2474 1
SD+L 263 328
SD+N 121
SD+O 11600
SD+X 1267
SGD 580
SGD+L 2529
SGD+O 15580
ST 4890 105 2 7093
ST+L 30 3311
ST+O 859
STD 722 6736
STD+L 9 498
STD+O 29855
STGD 1628
STGD+L 6556
STGD+O 39958
SUD 62
SUD+L 45 25
SUD+O 5
SUD+X 569
SUTD 23
SUTD+L 30 15
SUTD+O 134