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Statistics iRefIndex 10.0

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Contents

Interactions available from major taxonomies

NCBI taxonomy identifier Scientific name Number of interactions
9606 Homo sapiens 194174
559292 Saccharomyces cerevisiae S288c 95517
7227 Drosophila melanogaster 60120
4932 Saccharomyces cerevisiae 47815
40674 Mammalia 36363
10090 Mus musculus 28131
3702 Arabidopsis thaliana 20734
83333 Escherichia coli K-12 15155
6239 Caenorhabditis elegans 13845
192222 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 11970
10116 Rattus norvegicus 7597
562 Escherichia coli 5360
4896 Schizosaccharomyces pombe 4171
632 Yersinia pestis 3956

Interactions available from major taxonomies (corrected)

NCBI taxonomy identifier Scientific name Number of interactions
9606 Homo sapiens 204941
559292 Saccharomyces cerevisiae S288c 110273
7227 Drosophila melanogaster 60123
10090 Mus musculus 24868
3702 Arabidopsis thaliana 20734
83333 Escherichia coli K-12 17284
6239 Caenorhabditis elegans 13845
192222 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 12000
10116 Rattus norvegicus 6073
284812 Schizosaccharomyces pombe 972h- 4422
632 Yersinia pestis 3956
243276 Treponema pallidum subsp. pallidum str. Nichols 3643
1111708 Synechocystis sp. PCC 6803 substr. Kazusa 3186
1392 Bacillus anthracis 3042

Interactions

BIND BIND_TRANSLATION BIOGRID CORUM DIP HPRD INNATEDB INTACT MATRIXDB MINT MPACT MPI-IMEX MPI-LIT MPPI OPHID
BIND 63020 50014 20225 177 24324 1567 265 22121 3 20900 5912 6 27 299 1722
BIND_TRANSLATION 60618 22798 166 25300 2269 364 22858 3 21923 5855 6 23 300 2400
BIOGRID 197878 118 28542 7749 807 35065 6 37858 4189 1 87 5125
CORUM 2607 114 140 59 280 128 15 239
DIP 70256 453 330 25330 3 31655 6307 43 190 51 1105
HPRD 40556 770 4252 17 3235 113 7106
INNATEDB 9663 864 6 581 47 1143
INTACT 161889 14 44341 6234 64 141 101 7881
MATRIXDB 225 2 1 25
MINT 87948 6484 15 37 90 7192
MPACT 13338
MPI-IMEX 468 30
MPI-LIT 742
MPPI 778 181
OPHID 47500
(Exclusive to source) 10946 5435 129453 1993 24053 26650 7146 97895 179 21184 5362 364 443 237 31077

Interactors

BIND BIND_TRANSLATION BIOGRID CORUM DIP HPRD INNATEDB INTACT MATRIXDB MINT MPACT MPI-IMEX MPI-LIT MPPI OPHID
BIND 37581 29664 15420 1817 15330 2317 1667 17304 88 16014 4200 31 85 610 2717
BIND_TRANSLATION 36033 16430 1837 15699 2788 1878 17801 95 16311 3877 30 95 611 3082
BIOGRID 41019 2247 14132 5903 2486 25406 104 18038 4469 2 435 5348
CORUM 4363 1360 1533 1336 3410 51 2667 408 2248
DIP 23369 1394 1363 17963 72 16859 4408 126 380 363 2006
HPRD 9847 1871 5369 104 3980 270 5167
INNATEDB 4870 3545 107 2649 381 2617
INTACT 57606 165 25926 4932 183 499 659 7522
MATRIXDB 244 118 15 145
MINT 32795 4804 69 243 564 5648
MPACT 4982 1
MPI-IMEX 470 91
MPI-LIT 934
MPPI 835 418
OPHID 9539
(Exclusive to source) 6350 3682 10832 431 1972 2127 604 18822 33 3859 17 241 325 24 710

Summary of mapping interaction records to RIGs (Table 5)

Source Total records Protein-related interactions PPI assigned to RIGID % Unique RIGIDs %
BIND 157736 93957 91087 96.95 63020 69.19
BIND_TRANSLATION 192923 87081 81355 93.42 60618 74.51
BIOGRID 527569 300924 300064 99.71 197878 65.95
CORUM 2844 2844 2844 100.00 2607 91.67
DIP 74089 74089 72620 98.02 70256 96.74
HPRD 83022 83022 82982 99.95 40556 48.87
INNATEDB 17997 17997 14316 79.55 9663 67.50
INTACT 200185 197027 191386 97.14 161889 84.59
MATRIXDB 1065 473 387 81.82 225 58.14
MINT 127577 127312 125239 98.37 87948 70.22
MPACT 16504 16504 16308 98.81 13338 81.79
MPI-IMEX 473 473 468 98.94 468 100.00
MPI-LIT 745 745 742 99.60 742 100.00
MPPI 1814 1814 1583 87.27 778 49.15
OPHID 73257 73257 73257 100.00 47500 64.84
(All) 1477800 1077519 1054638 97.88 492588 -

Assignment of protein interactors to ROGs (Table 3)

Source Protein interactors Assigned % Arbitrary Matching sequence New or obsolete sequence Unassigned Unique proteins
BIND 252251 251990 99.90 0 0 1154 261 37581
BIND_TRANSLATION 257681 251245 97.50 40645 0 691 6436 36033
BIOGRID 41670 41185 98.84 9866 0 72 485 41019
CORUM 12916 12916 100.00 7 0 0 0 4363
DIP 24150 24129 99.91 1884 0 476 21 23369
HPRD 123812 123812 100.00 14818 99981 140 0 9847
INNATEDB 37398 33353 89.18 1 0 0 4045 4870
INTACT 165369 164471 99.46 69 29 360 898 57606
MATRIXDB 1274 1266 99.37 0 0 0 8 244
MINT 91829 91287 99.41 789 11 3924 542 32795
MPACT 40349 40134 99.47 0 0 3 215 4982
MPI-IMEX 946 940 99.37 2 0 0 6 470
MPI-LIT 1490 1487 99.80 7 0 0 3 934
MPPI 3568 3366 94.34 16 0 5 202 835
OPHID 146514 146514 100.00 405 12 1010 0 9539
(All) 1201217 1188095 98.91 68509 100033 7835 13122 107323

ROG summary

BIND BIND_TRANSLATION BIOGRID CORUM DIP HPRD INNATEDB INTACT MATRIXDB MINT MPACT MPI-IMEX MPI-LIT MPPI OPHID
P 173893 26063 12877 33352 163662 51523 616 1072
P+IN 2
P+L 19160 669 5
P+N 9 223
P+X 2 2
PD 115928 1263 3 2996 124549
PD+IN 1
PD+LQ 10536
PD+LYQ 67
PD+N 22
PD+X 9
PD+XQ 26
PDIQ 732
PDQ 30255
PDY 907 5 988
PDYQ 380
PGD 357 1411 102
PGD+L 6560 9184 705
PGD+X 5
PI 32 66
PIY 343
PT 2044 1646 1 34331 30579 320 404
PT+L 542 1
PTD 83701 3 2 44 114
PTD+LQ 3695
PTD+LYQ 12
PTDIQ 13
PTDQ 1863
PTDY 136
PTDYQ 34
PTGD 1
PTGD+L 37 3
PTI 11 1
PU 15 32 291 343 2
PU+L 17 7 1 42 39 7
PU+O 14 3
PU+X 610 1 15 1
PUD 6 143 16889
PUD+L 13 265
PUD+O 12
PUD+X 82 162 3526
PUT 4 14 170 2527 2 1
PUT+L 19 27 37 2
PUT+O 15 8
PUTD 4 9
PUTD+L 3 140
PV 7
PV+L 3
PY 198 47 3 3699
S 141 973 11160 36 1
S+L 3 1360 407
S+LY 6 1 6
S+N 2
S+O 384
S+X 263
S+XY 1
SD 1145 3410 2029
SD+L 181 297
SD+LY 35
SD+N 53
SD+O 12170
SD+OY 14
SD+X 1045
SD+XY 3
SDY 286
SGD 303
SGD+L 2934
SGD+O 15536
SI 45223
SIY 111
ST 4487 42 7025
ST+L 244 2569
ST+LY 61
ST+O 928
STD 8 627 5704
STD+L 4 723
STD+O 30869
STD+OY 6
STDY 2
STGD 846
STGD+L 7806
STGD+O 39941
STI 5883
STY 3
SU 32
SUD 43
SUD+L 32 8
SUD+O 2
SUD+X 759
SUTD 11
SUTD+L 27 7
SUTD+O 131
SY 19 148 2