User contributions
From irefindex
- 17:54, 9 March 2009 diff hist -14 Sources iRefIndex 3.0 Minor formatting edits.
- 17:52, 9 March 2009 diff hist +460 iRefIndex New release: added CORUM.
- 17:51, 9 March 2009 diff hist -64 README iRefIndex MITAB 3.0 Updated dates, data sources.
- 17:41, 9 March 2009 diff hist +111 iRefIndex Release Process →Updating the Wiki: Added data source note.
- 16:45, 9 March 2009 diff hist +4,109 N Sources iRefIndex 3.0 New page: Last edited: March 9th, 2009<br> Applies to iRefIndex release: 3.0<br> Release date: March 9th, 2009<br> Authors: Ian Donaldson and Sabry Razick (with changes from Paul Boddie)<br> Databas...
- 16:03, 6 March 2009 diff hist +267 iRefIndex Release Process Added Wiki update activities.
- 15:59, 6 March 2009 diff hist +1,631 iRefIndex Output and Statistics Added reports2wiki program usage.
- 15:36, 6 March 2009 diff hist +11 README iRefIndex MITAB 3.0 Changed the download location to a more permanent reference.
- 15:34, 6 March 2009 diff hist +12 README iRefIndex MITAB 2.0 Changed the download location to a more permanent reference. current
- 15:18, 6 March 2009 diff hist -2 m iRefIndex →Data availability via download: Formatting change.
- 15:17, 6 March 2009 diff hist +1,883 iRefIndex Release Process Added file upload information.
- 17:24, 5 March 2009 diff hist +11,393 N Statistics iRefIndex 3.0 New page: == Interactions == {| | BIND||62831 |- | BIOGRID||20701 || 155527 |- | DIP||0 || 0 || 0 |- | HPRD||0 || 0 || 0 || 0 |- | INTACT||24372 || 25772 || 0 || 0 || 110545 |- | MINT||22...
- 15:52, 5 March 2009 diff hist -12 Video current
- 13:06, 5 March 2009 diff hist +502 Bioscape Methods Added notes about result scoring.
- 11:53, 5 March 2009 diff hist +5,163 N iRefIndex Output and Statistics Moved PSI_MI_TAB_Maker details to this page. Added report generation details.
- 11:51, 5 March 2009 diff hist -1,552 Help:Contents New page: See Help:Editing for some information on editing pages.
- 11:43, 5 March 2009 diff hist -4,491 iRefIndex Build Process Moved PSI_MI_TAB_Maker to a new page.
- 11:41, 5 March 2009 diff hist +54 iRefIndex Release Process Added link to output and statistics details.
- 11:36, 5 March 2009 diff hist +54 iRefIndex MITAB2.5 Parser →Prerequisites: Added links.
- 11:33, 5 March 2009 diff hist 0 m Bioscape Make links nicer.
- 11:27, 5 March 2009 diff hist +1,921 N iRefIndex MITAB2.5 Parser New page: A tool has been developed to parse the MITAB files produced in the iRefIndex Build Process. == Obtaining the MITAB Parser == The parser and associated resources can be obtained from ...
- 11:12, 5 March 2009 diff hist 0 m iRefIndex Release Process Make links nicer.
- 11:10, 5 March 2009 diff hist +79 iRefIndex Release Process Added link to MITAB parser details.
- 17:56, 4 March 2009 diff hist +63 README iRefIndex MITAB 3.0 Edited author column (duplicates).
- 17:34, 4 March 2009 diff hist +31 Nm Category:Bioscape New page: Information about Bioscape. current
- 17:33, 4 March 2009 diff hist +23 m Bioscape Methods Added category.
- 17:33, 4 March 2009 diff hist +23 m Bioscape Issues and Tasks Added category.
- 17:33, 4 March 2009 diff hist +23 m Bioscape Development Added category.
- 17:33, 4 March 2009 diff hist +23 m Bioscape Distribution Added category.
- 17:32, 4 March 2009 diff hist +23 m Bioscape Installation Added category.
- 17:32, 4 March 2009 diff hist +23 m Bioscape Manual Added category.
- 17:32, 4 March 2009 diff hist -16 m Bioscape Added category.
- 17:31, 4 March 2009 diff hist +32 Nm Category:iRefIndex New page: Information about iRefIndex. current
- 17:30, 4 March 2009 diff hist +24 m Statistics iRefIndex 2.0 Added category. current
- 17:30, 4 March 2009 diff hist +24 m Sources iRefIndex 2.0 Added category. current
- 17:29, 4 March 2009 diff hist +24 m README iRefIndex MITAB 2.0 Added category.
- 17:29, 4 March 2009 diff hist +24 m README iRefIndex Feedback 1.1 Added category. current
- 17:29, 4 March 2009 diff hist +24 m README iRefIndex MITAB 1.1 Added category. current
- 17:28, 4 March 2009 diff hist +24 m iRefIndex Development Added category.
- 17:27, 4 March 2009 diff hist +24 m iRefIndex Release Process Added category.
- 17:27, 4 March 2009 diff hist +24 m iRefIndex Build Process Added category.
- 17:27, 4 March 2009 diff hist +24 m iRefIndex Manual Added category.
- 17:26, 4 March 2009 diff hist +24 m iRefIndex Added category.
- 17:25, 4 March 2009 diff hist +24 README iRefIndex MITAB 3.0 Added category.
- 17:20, 4 March 2009 diff hist +28,304 N README iRefIndex MITAB 3.0 Changed Method (now multiple value), interactionType (now multiple value) and pmids, confidence (null values), alternatives (duplicates). Improved formatting. Fixed syntax issues in the altA values.
- 12:45, 4 March 2009 diff hist -16 iRefIndex Build Process →Building PSI_MI_TAB_Maker: Changed output directory.
- 12:45, 4 March 2009 diff hist +12 iRefIndex Build Process →Running PSI_Writer: Switched to PSI_MI_TAB_Maker.
- 12:42, 4 March 2009 diff hist +668 iRefIndex Build Process →Building PSI_Writer: Switched to PSI_MI_TAB_Maker.
- 12:07, 2 March 2009 diff hist +133 iRefIndex Build Process →ROG_ass + RIG_fill+ make Cy: Added field value example.
- 15:37, 26 February 2009 diff hist 0 iRefIndex Build Process →Running BioPSI_Suplimenter: Need more memory!
- 15:21, 23 February 2009 diff hist 0 iRefIndex Build Process →Running BioPSI_Suplimenter: 256m -> 512m
- 15:10, 23 February 2009 diff hist +1,467 N Bioscape Methods Initial draft.
- 13:19, 23 February 2009 diff hist +23 Bioscape Manual Added methods document.
- 12:34, 20 February 2009 diff hist +990 iRefIndex Build Process →Running BioPSI_Suplimenter: Added log directory note, examples.
- 12:06, 20 February 2009 diff hist +78 iRefIndex Build Process →Running BioPSI_Suplimenter: Added server details.
- 11:58, 20 February 2009 diff hist +5 iRefIndex Build Process →Building BioPSI_Suplimenter: Changed SHA output directory.
- 11:57, 20 February 2009 diff hist +5 iRefIndex Build Process →Building SHA: Changed output directory.
- 14:46, 19 February 2009 diff hist -5 iRefIndex Build Process →Building FTPtransfer: Fixed source code editing note.
- 13:11, 19 February 2009 diff hist 0 m iRefIndex Build Process →UniProt
- 13:11, 19 February 2009 diff hist +13 m iRefIndex Build Process →MIPS
- 13:10, 19 February 2009 diff hist 0 iRefIndex Build Process →CORUM
- 13:10, 19 February 2009 diff hist 0 m iRefIndex Build Process →BioGrid
- 13:10, 19 February 2009 diff hist +132 iRefIndex Build Process →UniProt: Added examples.
- 13:07, 19 February 2009 diff hist +113 iRefIndex Build Process →MIPS: Added examples.
- 13:05, 19 February 2009 diff hist +73 iRefIndex Build Process →OPHID: Added examples.
- 13:04, 19 February 2009 diff hist +114 iRefIndex Build Process →HPRD: Added examples.
- 13:00, 19 February 2009 diff hist +112 iRefIndex Build Process →DIP: Added examples.
- 12:56, 19 February 2009 diff hist +831 iRefIndex Build Process Changed data directory. Updated various details and added examples.
- 10:45, 19 February 2009 diff hist 0 iRefIndex Manual
- 17:37, 16 February 2009 diff hist +114 m Bioscape Issues and Tasks
- 17:36, 16 February 2009 diff hist +114 m Bioscape Development
- 17:36, 16 February 2009 diff hist +114 m Bioscape Distribution
- 17:36, 16 February 2009 diff hist +114 Bioscape Installation
- 17:35, 16 February 2009 diff hist +4,988 N Bioscape Issues and Tasks New page: As described in a document originally produced by Ian Donaldson, here are the current issues, wishes and related notes. == Disambiguation and Elimination == Use synonyms to disambiguate ...
- 17:22, 16 February 2009 diff hist +32 Bioscape Manual
- 17:12, 16 February 2009 diff hist +517 N iRefIndex Development New page: == Adding Sources to iRefIndex == # Identify the location of the downloaded data. # Evaluate the form of the data: ## For PSI MI XML (Molecular Interaction XML) documents, check the versi...
- 17:10, 16 February 2009 diff hist +374 N iRefIndex Release Process New page: The release process consists of the following activities: # Build the database - see iRefIndex_Build_Process for details. # Generate output files and statistics. # Test the output. # ...
- 13:48, 13 February 2009 diff hist +7,790 iRefIndex Build Process Completed the transfer.
- 13:17, 13 February 2009 diff hist +4,504 iRefIndex Build Process Added more build details.
- 17:33, 12 February 2009 diff hist +12,406 N iRefIndex Build Process The first parts of the original document.
- 14:22, 12 February 2009 diff hist +258 iRefIndex Manual
- 12:54, 12 February 2009 diff hist +114 Bioscape Manual
- 15:21, 10 February 2009 diff hist +108 Bioscape Manual
- 15:19, 10 February 2009 diff hist 0 m Bioscape Installation Bioscape Manual moved to Bioscape Installation: The manual will refer to the different documents including this one.
- 15:19, 10 February 2009 diff hist +35 N Bioscape Manual Bioscape Manual moved to Bioscape Installation: The manual will refer to the different documents including this one.
- 15:19, 10 February 2009 diff hist +1,098 Bioscape Development
- 15:16, 10 February 2009 diff hist +1,947 Bioscape Development
- 15:05, 10 February 2009 diff hist +4,403 N Bioscape Development New page: == Bioscape Development == This document describes a selection of different development tasks undertaken when improving Bioscape. === Adding New Scoring Methods === The following steps ...
- 13:35, 10 February 2009 diff hist +74 Bioscape Distribution →Software: Added ChEBI module.
- 16:23, 4 February 2009 diff hist +20 m README Cytoscape plugin 3.0 Beta Formatting fixes and wording improvements.
- 16:12, 4 February 2009 diff hist +472 Bioscape Distribution Switched to recommended heading levels. Added API documentation note.
- 16:10, 4 February 2009 diff hist +22 m Bioscape Installation Switched to recommended heading levels.
- 16:08, 4 February 2009 diff hist +5,121 N Bioscape Distribution Initial draft based on parts of README.txt.
- 13:30, 4 February 2009 diff hist +9,550 Bioscape Installation Initial draft based on parts of README.txt.
- 13:44, 28 January 2009 diff hist +28 m README Cytoscape plugin 3.0 Beta
- 17:24, 26 January 2009 diff hist +77 N Help:Editing New page: See the [http://meta.wikimedia.org/wiki/Help:Editing MediaWiki editing help].
- 17:21, 26 January 2009 diff hist +116 README Cytoscape plugin 3.0 Beta Used Wiki syntax to improve the readability. Included additional notes.
- 11:20, 21 October 2008 diff hist -3 m MNBTS 9000 (2008) Fix link syntax.
- 14:04, 5 August 2008 diff hist +11 iRefIndex Remove table of contents.
- 14:02, 5 August 2008 diff hist +553 iRefIndex Linked references, tidied the formatting.