Cytoscape layout analysis

Here we have given results of a analysis we did for selecting a layout algorithm for iRefsCape plug-in. The analysis was conducted only for freely accessible layouts.

Network used for the analysis; directed, 641 nodes , 1586 Edges, (search results for Raf1, type=geneSymbol, taxid=any from iRefsCape )

Initial	Final algorithm	Time taken
Grid	jgraph-circle	14 minutes :42 seconds
Grid	attribute-circle	64 milliseconds
Grid	jgraph-radial-tree	14 minutes :22 seconds
Grid	jgraph-gem	14 minutes :47 seconds
Grid	kamada-kawai-noweight	25 seconds
Grid	circular	207 milliseconds
Grid	jgraph-sugiyama	14 minutes :18 seconds
Grid	attributes-	46 milliseconds
Grid	grid	17 milliseconds
Grid	jgraph-tree	14 minutes :25 seconds
Grid	force-directed	3 seconds
Grid	degree-circle	517 milliseconds
Grid	kamada-kawai	13 seconds
Grid	fruchterman-rheingold	53 seconds
Grid	jgraph-spring	14 minutes :30 seconds
Grid	Jgraph-annealing	Not evaluated
Grid	Isom	Not evaluated
Grid	Jgraph-moen	Not evaluated

Initial	Final algorithm	Time taken
jgraph-circle	Grid	30 milliseconds
attribute-circle	Grid	25 milliseconds
jgraph-radial-tree	Grid	27 milliseconds
jgraph-gem	Grid	31 milliseconds
kamada-kawai-noweight	Grid	31 milliseconds
circular	Grid	31 milliseconds
jgraph-sugiyama	Grid	25 milliseconds
attributes-	Grid	30 milliseconds
grid	Grid	16 milliseconds
jgraph-tree	Grid	30 milliseconds
force-directed	Grid	29 milliseconds
degree-circle	Grid	30 milliseconds
kamada-kawai	Grid	31 milliseconds
fruchterman-rheingold	Grid	29 milliseconds
jgraph-spring	Grid	285 milliseconds